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Senior Machine Learning Engineer (Clinical Team)

๐Ÿ“… Sep 18
Applied Machine LearningImage SegmentationSemantic SegmentationInstance Segmentation
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๐Ÿ“œ Description

  • Own tissue-class segmentation and labeling models and the pipelines that make them trainable and verifiable.
  • Retune models across 2D, 3D volumetric, and fused inputs as reconstructed images and clinical indications evolve.
  • Define training and evaluation pipelines, datasets, and metrics; connect model behavior to user needs and design requirements.
  • Coordinate labeling specifications, quality control, and dataset versioning with contractors, clinicians, and internal cloud and data teams.
  • Productionize models in a versioned analysis service with reproducible, low-latency inference, confidence estimates, drift monitoring, and safe fallbacks.

๐Ÿ› ๏ธ Requirements

  • Strong applied ML experience with a track record of developing new models โ€” architecting, training, and evaluating from scratch as well as benchmarking against existing models.
  • Experience with image segmentation (semantic/instance, 2D and ideally 3D/volumetric) and the modeling and training-data choices that make it robust across diverse patient anatomy.
  • Comfortable moving fluidly between open-ended research iteration and producing quantifiable, testable models.
  • Fluent in modern deep-learning tooling (e.g., PyTorch) and current development practices.
  • Comfortable working under design controls, where model changes carry documentation and verification weight.
  • Image segmentation and label generation with modern architectures (U-Net / nnU-Net, 3D U-Net, transformer-based and promptable segmentation like SAM), including the geometry that ties voxel- and mesh-level predictions back to a coordinate frame.
  • Learning under limited or noisy supervision: self-supervised / semi-supervised methods (masked autoencoders, contrastive pretraining like DINO/SimCLR), active learning, weak labels, and simulation-driven pretraining.
  • Hands-on experience with data curation for ML: building datasets from messy, real-world sources, helping to define ground truth, and managing labeling or simulation pipelines (MONAI, ITK / SimpleITK, 3D Slicer).
  • Experience with segmentation models for ultrasound imaging, whether on synthetic or real images
  • ML for imaging or inverse problems in physics-based domains (CT, MRI, ultrasound, or adjacent), and comfort working alongside reconstruction/signal-processing teams.
Full job description

What youโ€™ll do

  1. Own the tissue-class segmentation and labeling models for the ultrasound CT clinical analysis layer, and the pipelines that make them trainable and verifiable.

  2. Retune across 2D per-slice, 3D volumetric, and 2Dร—3D fusion as reconstructed image inputs are continuously updated, and clinical indications for use expand.

  3. Define training/evaluation pipelines, datasets, and metrics from the ground up or from open source; map model behavior to user needs and design requirements.

  4. Work with data labeling contractors, expert clinicians, and our internal cloud/data teams on labeling specs, QC, and dataset versioning.

  5. Help productionize models into a versioned, HIPAA-bound analysis service: reproducible/low-latency inference, per-prediction confidence, drift monitoring, and safe fallbacks.

What weโ€™re looking for

  • Strong applied ML experience with a track record of developing new models โ€” architecting, training, and evaluating from scratch as well as benchmarking against existing models.

  • Experience with image segmentation (semantic/instance, 2D and ideally 3D/volumetric) and the modeling and training-data choices that make it robust across diverse patient anatomy.

  • Comfortable moving fluidly between open-ended research iteration and producing quantifiable, testable models.

  • Fluent in modern deep-learning tooling (e.g., PyTorch) and current development practices.

  • Comfortable working under design controls, where model changes carry documentation and verification weight.

Useful experience

  • Image segmentation and label generation with modern architectures (U-Net / nnU-Net, 3D U-Net, transformer-based and promptable segmentation like SAM), including the geometry that ties voxel- and mesh-level predictions back to a coordinate frame.

  • Learning under limited or noisy supervision: self-supervised / semi-supervised methods (masked autoencoders, contrastive pretraining like DINO/SimCLR), active learning, weak labels, and simulation-driven pretraining.

  • Hands-on experience with data curation for ML: building datasets from messy, real-world sources, helping to define ground truth, and managing labeling or simulation pipelines (MONAI, ITK / SimpleITK, 3D Slicer).

  • Experience with segmentation models for ultrasound imaging, whether on synthetic or real images

  • ML for imaging or inverse problems in physics-based domains (CT, MRI, ultrasound, or adjacent), and comfort working alongside reconstruction/signal-processing teams.

  • Deploying models in versioned, auditable, high-stakes settings.

  • A background in anatomy, medical imaging, or body composition and prior work with existing segmentation models is a plus.

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